PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.078700.1
Common NameCsa_7G333400, LOC101206441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 533aa    MW: 58767.6 Da    PI: 6.4416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.078700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16320366455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+k Lq
  Cucsa.078700.1 320 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 366
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-21314382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-17319370No hitNo description
PfamPF000109.4E-14320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-21320375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MIGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSLPDDD VMELLWQNGQ VVTHSQNQRS  60
FRKSPPSKFD VSIPQEQAAT REIRPSTQLE EHHELFMQED EMASWLNYPL VEDHNFCSDL  120
LFPAITAPLC ANPQPDIRPS ATATLTLTPR PPIPPCRRPE VQTSVQFSRN KATVESEPSN  180
SKVMVRESTV VDSCDTPSVG PESRASEMAR RKLVEVVNGG GVRYEIARGS DGVRGASVGG  240
DGIGEKEMMT CEMTVTSSPG GSSASAEPAC PKLAVDDRKR KGRALDDTEC QSEDVEYESA  300
DPKKQLRGST STKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKTD KASMLDEAIE  360
YLKTLQLQVQ MMSMGCGMMP MMFPGVQQYL PPPMGMGMGM GMEMGMNRPM MQFHNLLAGS  420
NLPMQAGATA AAHLGPRFPL PPFAMPPVPG NDPSRAQAMN NQPDPMANSV GTQNTTPPSV  480
LGFPDSYQQF LSSTQMQFHM TQALQNQHPV QLNTSRPCTS RGPENRDNHQ SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659164.10.0PREDICTED: transcription factor PIF1
RefseqXP_011659165.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A0A0K5310.0A0A0A0K531_CUCSA; Uncharacterized protein
STRINGSolyc09g063010.2.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-70phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]